STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166980Homeobox protein. (340 aa)    
Predicted Functional Partners:
nr4a2
Nuclear receptor subfamily 4, group A, member 2b.
    
 
 0.571
th
Tyrosine hydroxylase 1.
      
 0.556
olfml2a
Olfactomedin-like 2A.
      
 0.509
LOC101156820
Olfactomedin 2a.
      
 0.508
LOC100301611
Forkhead box E3.
   
 
 0.476
cryaa
Alpha-crystallin A chain; May contribute to the transparency and refractive index of the lens; Belongs to the small heat shock protein (HSP20) family.
   
  
 0.468
bcl6
BCL6A transcription repressor a.
    
 
 0.449
LOC101166967
Crystallin, beta B2; Belongs to the beta/gamma-crystallin family.
      
 0.443
tbx4
T-box transcription factor 4.
   
 
 0.434
pknox1
Pbx/knotted 1 homeobox 1.1.
      
 0.432
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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