ENSORLP00000032097 protein (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSORLP00000032097

Uncharacterized protein. (189 aa)

Predicted Functional Partners:

casp9

0.964

tab1

0.951

ripk2

0.918

LOC101159282

0.905

diablo

0.905

tradd

0.830

tnfrsf1a

0.816

apaf1

0.806

LOC101172593

0.797

rps27a

0.796

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000032097	LOC101159282	ENSORLP00000032097	ENSORLP00000005325	Uncharacterized protein.	Diablo, IAP-binding mitochondrial protein a.	0.905
ENSORLP00000032097	LOC101172593	ENSORLP00000032097	ENSORLP00000013121	Uncharacterized protein.	Tumor necrosis factor a (TNF superfamily, member 2).	0.797
ENSORLP00000032097	apaf1	ENSORLP00000032097	ENSORLP00000019346	Uncharacterized protein.	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	0.806
ENSORLP00000032097	casp9	ENSORLP00000032097	ENSORLP00000040536	Uncharacterized protein.	Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.964
ENSORLP00000032097	diablo	ENSORLP00000032097	ENSORLP00000036374	Uncharacterized protein.	Diablo, IAP-binding mitochondrial protein a.	0.905
ENSORLP00000032097	ripk2	ENSORLP00000032097	ENSORLP00000010554	Uncharacterized protein.	Receptor-interacting serine-threonine kinase 2.	0.918
ENSORLP00000032097	rps27a	ENSORLP00000032097	ENSORLP00000038189	Uncharacterized protein.	Ribosomal protein S27a.	0.796
ENSORLP00000032097	tab1	ENSORLP00000032097	ENSORLP00000013462	Uncharacterized protein.	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.951
ENSORLP00000032097	tnfrsf1a	ENSORLP00000032097	ENSORLP00000015338	Uncharacterized protein.	Tumor necrosis factor receptor superfamily, member 1a.	0.816
ENSORLP00000032097	tradd	ENSORLP00000032097	ENSORLP00000040480	Uncharacterized protein.	Tnfrsf1a-associated via death domain.	0.830
LOC101159282	ENSORLP00000032097	ENSORLP00000005325	ENSORLP00000032097	Diablo, IAP-binding mitochondrial protein a.	Uncharacterized protein.	0.905
LOC101159282	apaf1	ENSORLP00000005325	ENSORLP00000019346	Diablo, IAP-binding mitochondrial protein a.	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	0.799
LOC101159282	casp9	ENSORLP00000005325	ENSORLP00000040536	Diablo, IAP-binding mitochondrial protein a.	Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.820
LOC101159282	diablo	ENSORLP00000005325	ENSORLP00000036374	Diablo, IAP-binding mitochondrial protein a.	Diablo, IAP-binding mitochondrial protein a.	0.902
LOC101172593	ENSORLP00000032097	ENSORLP00000013121	ENSORLP00000032097	Tumor necrosis factor a (TNF superfamily, member 2).	Uncharacterized protein.	0.797
LOC101172593	casp9	ENSORLP00000013121	ENSORLP00000040536	Tumor necrosis factor a (TNF superfamily, member 2).	Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.602
LOC101172593	ripk2	ENSORLP00000013121	ENSORLP00000010554	Tumor necrosis factor a (TNF superfamily, member 2).	Receptor-interacting serine-threonine kinase 2.	0.542
LOC101172593	rps27a	ENSORLP00000013121	ENSORLP00000038189	Tumor necrosis factor a (TNF superfamily, member 2).	Ribosomal protein S27a.	0.565
LOC101172593	tab1	ENSORLP00000013121	ENSORLP00000013462	Tumor necrosis factor a (TNF superfamily, member 2).	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.964
LOC101172593	tnfrsf1a	ENSORLP00000013121	ENSORLP00000015338	Tumor necrosis factor a (TNF superfamily, member 2).	Tumor necrosis factor receptor superfamily, member 1a.	0.999