STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpg1Uncharacterized protein. (854 aa)    
Predicted Functional Partners:
rb1cc1
RB1-inducible coiled-coil 1.
   
 0.948
Unc79
Uncharacterized protein.
    
 0.786
sec62
SEC62 homolog, preprotein translocation factor.
   
 
 0.773
tex264
Testis expressed 264, ER-phagy receptor a.
      
 0.700
TEX264
Testis expressed 264, ER-phagy receptor.
      
 0.700
LOC101170222
Reticulon.
    
 0.643
LOC101173476
Atlastin 3.
      
 0.604
Retreg1
Reticulophagy regulator 1.
    
 
 0.563
LOC101160447
RAN binding protein 2.
    
 0.537
gabarap
GABA(A) receptor-associated protein b.
    
 
 0.536
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.