STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160408Family with sequence similarity 174 member B. (213 aa)    
Predicted Functional Partners:
LOC101161150
LysM, putative peptidoglycan-binding, domain containing 4.
      
 0.668
nudt8
Nudix (nucleoside diphosphate linked moiety X)-type motif 8.
      
 0.558
pdxp
Pyridoxal (pyridoxine, vitamin B6) phosphatase; Belongs to the HAD-like hydrolase superfamily.
      
 0.485
xxylt1
Xyloside xylosyltransferase 1.
      
 0.463
lysmd3
LysM, putative peptidoglycan-binding, domain containing 3.
      
 0.457
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
      
 0.453
tbc1d16
TBC1 domain family, member 16.
      
 0.449
H2M6V7_ORYLA
Family with sequence similarity 124B.
      
 0.400
nup50
Nucleoporin 50.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.