STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111948029Forkhead box I3b. (389 aa)    
Predicted Functional Partners:
gcm2
GCM domain-containing protein.
   
 
 0.673
LOC100049240
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
     
 0.560
LOC101166353
Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.
      
 0.546
mak
Male germ cell-associated kinase.
   
  
 0.516
LOC101157253
Distal-less homeobox 4b.
    
 
 0.504
col1
Uncharacterized protein.
    
 0.488
fgf3
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
   
 
 0.485
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 
 0.476
plk2
Serine/threonine-protein kinase PLK.
   
 0.444
plk3
Serine/threonine-protein kinase PLK.
   
 0.444
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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