STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159028Grainyhead-like transcription factor 2b. (610 aa)    
Predicted Functional Partners:
lmx1b
LIM homeobox transcription factor 1, beta b.
    
 
 0.523
LOC101158428
Immunoglobulin-like domain containing receptor 1a.
   
  
 0.451
trrap
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.451
LOC101175444
Immunoglobulin-like domain containing receptor 1b.
   
  
 0.444
ripor2
RHO family interacting cell polarization regulator 2.
   
  
 0.439
prps1
Phosphoribosyl pyrophosphate synthetase 1B.
      
 0.435
tmem132e
Transmembrane protein 132E.
      
 0.435
ENSORLP00000036342
Stereocilin.
    
 
 0.435
Msrb3
Peptide-methionine (R)-S-oxide reductase; Methionine-sulfoxide reductase that specifically reduces methionine (R)-sulfoxide back to methionine. While in many cases methionine oxidation is the result of random oxidation following oxidative stress, methionine oxidation is also a post-translational modification that takes place on specific residues.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.