STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcdh9Protocadherin 9. (1235 aa)    
Predicted Functional Partners:
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
    
 0.623
LOC101170569
Uncharacterized protein.
   
 0.612
ctnnd1
Uncharacterized protein.
   
 0.612
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 0.544
TNS3
Tensin 3.
   
  
 0.506
TNS3-2
Tensin 3.
   
  
 0.506
H2LAE2_ORYLA
Tensin 1.
   
  
 0.451
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.451
ocln
Occludin b.
     
 0.440
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
     
 0.428
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.