LOC101161457 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101161457

TEA domain family member 1a. (427 aa)

Predicted Functional Partners:

yap1

0.930

LOC101172901

0.645

vgll4

0.645

H2L8L5_ORYLA

0.602

LOC101163583

0.570

pa2g4

0.501

LOC101167662

0.501

LOC101161355

0.480

INSM2

0.480

insm1

0.480

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2L8L5_ORYLA	LOC101161457	ENSORLP00000002189	ENSORLP00000032361	Uncharacterized protein.	TEA domain family member 1a.	0.602
INSM2	LOC101161457	ENSORLP00000035007	ENSORLP00000032361	INSM transcriptional repressor 2.	TEA domain family member 1a.	0.480
LOC101161355	LOC101161457	ENSORLP00000027911	ENSORLP00000032361	Insulinoma-associated 1b.	TEA domain family member 1a.	0.480
LOC101161457	H2L8L5_ORYLA	ENSORLP00000032361	ENSORLP00000002189	TEA domain family member 1a.	Uncharacterized protein.	0.602
LOC101161457	INSM2	ENSORLP00000032361	ENSORLP00000035007	TEA domain family member 1a.	INSM transcriptional repressor 2.	0.480
LOC101161457	LOC101161355	ENSORLP00000032361	ENSORLP00000027911	TEA domain family member 1a.	Insulinoma-associated 1b.	0.480
LOC101161457	LOC101163583	ENSORLP00000032361	ENSORLP00000043174	TEA domain family member 1a.	Vestigial like 4 like.	0.570
LOC101161457	LOC101167662	ENSORLP00000032361	ENSORLP00000039639	TEA domain family member 1a.	NK-lysin tandem duplicate 1.	0.501
LOC101161457	LOC101172901	ENSORLP00000032361	ENSORLP00000014399	TEA domain family member 1a.	Vestigial-like family member 4a.	0.645
LOC101161457	insm1	ENSORLP00000032361	ENSORLP00000045285	TEA domain family member 1a.	Insulinoma-associated 1a.	0.480
LOC101161457	pa2g4	ENSORLP00000032361	ENSORLP00000036499	TEA domain family member 1a.	Proliferation-associated 2G4, a.	0.501
LOC101161457	vgll4	ENSORLP00000032361	ENSORLP00000026986	TEA domain family member 1a.	Vestigial-like family member 4b.	0.645
LOC101161457	yap1	ENSORLP00000032361	ENSORLP00000003377	TEA domain family member 1a.	Transcriptional coactivator YAP1; Transcriptional regulator which can act both as a coactivator and a corepressor and is the critical downstream regulatory target in the Hippo signaling pathway that plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis (By similarity). Plays a key role in tissue tension and 3D tissue shape by regulating cortical actomyosin network formation.	0.930
LOC101163583	LOC101161457	ENSORLP00000043174	ENSORLP00000032361	Vestigial like 4 like.	TEA domain family member 1a.	0.570
LOC101167662	LOC101161457	ENSORLP00000039639	ENSORLP00000032361	NK-lysin tandem duplicate 1.	TEA domain family member 1a.	0.501
LOC101167662	pa2g4	ENSORLP00000039639	ENSORLP00000036499	NK-lysin tandem duplicate 1.	Proliferation-associated 2G4, a.	0.517
LOC101172901	LOC101161457	ENSORLP00000014399	ENSORLP00000032361	Vestigial-like family member 4a.	TEA domain family member 1a.	0.645
LOC101172901	yap1	ENSORLP00000014399	ENSORLP00000003377	Vestigial-like family member 4a.	Transcriptional coactivator YAP1; Transcriptional regulator which can act both as a coactivator and a corepressor and is the critical downstream regulatory target in the Hippo signaling pathway that plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis (By similarity). Plays a key role in tissue tension and 3D tissue shape by regulating cortical actomyosin network formation.	0.733
insm1	LOC101161457	ENSORLP00000045285	ENSORLP00000032361	Insulinoma-associated 1a.	TEA domain family member 1a.	0.480
pa2g4	LOC101161457	ENSORLP00000036499	ENSORLP00000032361	Proliferation-associated 2G4, a.	TEA domain family member 1a.	0.501