STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156401Bromodomain and PHD finger containing, 3a. (1229 aa)    
Predicted Functional Partners:
meaf6
MYST/Esa1-associated factor 6.
    
 0.919
kat6a
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.851
kat6b
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.843
ing5
Inhibitor of growth protein.
    
 0.829
ing4
Inhibitor of growth protein.
    
 0.817
LOC101163229
Bromodomain containing 1b.
  
0.788
brd1
Bromodomain containing 1a.
  
0.786
brpf1
Uncharacterized protein.
  
0.786
kat8
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.673
kat5
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.673
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.