STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnb1ip1Cyclin B1 interacting protein 1. (292 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
      
 0.690
msh4
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.648
mlh3
MutL homolog 3 (E. coli).
      
 0.559
mlh1
MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
      
 0.559
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.558
mus81
MUS81 structure-specific endonuclease subunit.
      
 0.558
tex11
Testis expressed 11.
      
 0.523
LOC105355271
RING-type domain-containing protein.
   
  
 0.501
msh2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.482
prim2
DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands.
      
 0.478
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.