STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169196ANK_REP_REGION domain-containing protein. (1048 aa)    
Predicted Functional Partners:
LOC101171716
Serine/threonine-protein phosphatase.
    
 0.644
PPP6C
Serine/threonine-protein phosphatase.
    
 0.644
RNF146
Ring finger protein 146.
    
 0.549
H2MRC6_ORYLA
Ring finger protein 146.
    
 0.549
axin1
Axin 1.
    
 0.521
LOC101159441
Axin 2 (conductin, axil).
    
 0.521
AXIN2
Axin 2.
    
 0.521
LOC101155494
Uncharacterized protein.
    
 0.521
ppp6r2
Protein phosphatase 6, regulatory subunit 2a.
    
 0.468
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.