STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ncoa6Nuclear receptor coactivator 6. (2320 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
 0.991
bysl
Bystin-like.
   
 0.979
tsr1
TSR1 ribosome maturation factor.
   
 0.974
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
 0.973
riok2
RIO domain-containing protein.
   
 0.965
ltv1
LTV1 ribosome biogenesis factor.
   
 0.964
rbbp5
Retinoblastoma binding protein 5.
    
 0.961
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.961
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.957
aatf
Apoptosis antagonizing transcription factor.
   
 
 0.946
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.