STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101154981Toll-like receptor adaptor molecule 1. (577 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.989
LOC101158892
Interferon regulatory factor 3.
    
 0.982
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.959
tlr3
Toll-like receptor 3.
   
 0.954
irak4
Interleukin-1 receptor-associated kinase 4.
   
 0.953
LOC101166698
Protein kinase domain-containing protein.
   
 0.949
LOC101168078
Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.
   
 0.936
LOC101161906
Transmembrane p24 trafficking protein 2.
   
 0.936
LOC101168038
Protein kinase domain-containing protein.
   
 0.936
LOC101168285
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.936
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.