STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nqo1Flavodoxin_2 domain-containing protein. (270 aa)    
Predicted Functional Partners:
ggcx
Gamma-glutamyl carboxylase.
     
 0.922
vkorc1
Vitamin K epoxide reductase complex, subunit 1.
     
 0.920
vkorc1l1
Vitamin K epoxide reductase complex, subunit 1-like 1.
     
 0.917
H2MUB4_ORYLA
Flavodoxin_2 domain-containing protein.
  
  
 
0.901
gclc
Glutamate-cysteine ligase, catalytic subunit.
      
 0.623
odc1
Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.620
tmco3
Transmembrane and coiled-coil domains 3.
  
 
 0.611
iyd
Iodotyrosine deiodinase.
  
 
 0.561
sod3
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
      
 0.479
azin1
Antizyme inhibitor 1a; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.470
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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