LOC110017196 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110017196

Zgc:112496. (236 aa)

Predicted Functional Partners:

capzb

0.969

dctn2

0.909

s100b

0.895

actr10

0.877

dctn4

0.871

dctn5

0.843

LOC101164183

0.802

LOC101162870

0.789

LOC101166919

0.789

LOC101155023

0.777

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101155023	LOC110017196	ENSORLP00000037576	ENSORLP00000033134	EF-hand domain-containing protein.	Zgc:112496.	0.777
LOC101162870	LOC101164183	ENSORLP00000031330	ENSORLP00000042374	Dynactin 1a.	Dynactin 3 (p22).	0.969
LOC101162870	LOC110017196	ENSORLP00000031330	ENSORLP00000033134	Dynactin 1a.	Zgc:112496.	0.789
LOC101162870	actr10	ENSORLP00000031330	ENSORLP00000021881	Dynactin 1a.	Actin related protein 10; Belongs to the actin family.	0.962
LOC101162870	capzb	ENSORLP00000031330	ENSORLP00000000187	Dynactin 1a.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.939
LOC101162870	dctn2	ENSORLP00000031330	ENSORLP00000006746	Dynactin 1a.	Dynactin 2 (p50).	0.977
LOC101162870	dctn4	ENSORLP00000031330	ENSORLP00000008931	Dynactin 1a.	Dynactin 4.	0.956
LOC101162870	dctn5	ENSORLP00000031330	ENSORLP00000016053	Dynactin 1a.	Dynactin 5.	0.956
LOC101164183	LOC101162870	ENSORLP00000042374	ENSORLP00000031330	Dynactin 3 (p22).	Dynactin 1a.	0.969
LOC101164183	LOC101166919	ENSORLP00000042374	ENSORLP00000037337	Dynactin 3 (p22).	Dynactin 1b.	0.969
LOC101164183	LOC110017196	ENSORLP00000042374	ENSORLP00000033134	Dynactin 3 (p22).	Zgc:112496.	0.802
LOC101164183	actr10	ENSORLP00000042374	ENSORLP00000021881	Dynactin 3 (p22).	Actin related protein 10; Belongs to the actin family.	0.984
LOC101164183	capzb	ENSORLP00000042374	ENSORLP00000000187	Dynactin 3 (p22).	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.949
LOC101164183	dctn2	ENSORLP00000042374	ENSORLP00000006746	Dynactin 3 (p22).	Dynactin 2 (p50).	0.996
LOC101164183	dctn4	ENSORLP00000042374	ENSORLP00000008931	Dynactin 3 (p22).	Dynactin 4.	0.987
LOC101164183	dctn5	ENSORLP00000042374	ENSORLP00000016053	Dynactin 3 (p22).	Dynactin 5.	0.984
LOC101166919	LOC101164183	ENSORLP00000037337	ENSORLP00000042374	Dynactin 1b.	Dynactin 3 (p22).	0.969
LOC101166919	LOC110017196	ENSORLP00000037337	ENSORLP00000033134	Dynactin 1b.	Zgc:112496.	0.789
LOC101166919	actr10	ENSORLP00000037337	ENSORLP00000021881	Dynactin 1b.	Actin related protein 10; Belongs to the actin family.	0.962
LOC101166919	capzb	ENSORLP00000037337	ENSORLP00000000187	Dynactin 1b.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.939