STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctnnal1Catenin (cadherin-associated protein), alpha-like 1. (757 aa)    
Predicted Functional Partners:
tln2
Talin 2b.
   
 0.773
LOC101173776
Talin 2a.
   
 0.773
tln1
Talin 1.
   
 0.773
LOC101170569
Uncharacterized protein.
   
 0.704
ctnnd1
Uncharacterized protein.
   
 0.704
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.645
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.634
itgb3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.624
pcdh9
Protocadherin 9.
    
 0.623
cdh16
Cadherin 16, KSP-cadherin.
    
 0.613
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.