STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rai1Retinoic acid induced 1. (2246 aa)    
Predicted Functional Partners:
eed
Embryonic ectoderm development protein.
   
 0.606
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.603
rbbp5
Retinoblastoma binding protein 5.
    
 0.600
LOC101168249
Uncharacterized protein.
  
 0.563
mphosph8
Uncharacterized protein.
    
 0.517
LOC101158611
VEFS-Box domain-containing protein.
   
 0.485
suz12
SUZ12 polycomb repressive complex 2 subunit b.
   
 0.485
LOC101161131
Lysine (K)-specific demethylase 6A, like.
   
 0.474
LOC101164833
Lysine (K)-specific demethylase 6B, b.
   
 0.474
H2ME95_ORYLA
Lysine (K)-specific demethylase 6A.
   
 0.474
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.