STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ahdc1AT hook, DNA binding motif, containing 1. (1518 aa)    
Predicted Functional Partners:
scpep1
Carboxypeptidase; Belongs to the peptidase S10 family.
      
 0.470
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
      
 0.455
jcad
Junctional cadherin 5 associated a.
  
     0.434
LOC105354337
MBD domain-containing protein.
  
     0.427
scai
Suppressor of cancer cell invasion.
    
 
 0.425
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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