STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfsd9Major facilitator superfamily domain containing 9. (471 aa)    
Predicted Functional Partners:
tmem182
Transmembrane protein 182a.
      
 0.874
inpp4a
Inositol polyphosphate-4-phosphatase type I Aa.
      
 0.825
mfsd10
Major facilitator superfamily domain containing 10.
  
   
0.629
svopl
SVOP-like.
   
  
 0.563
aagab
Alpha and gamma adaptin binding protein.
      
 0.560
mfsd13a
Major facilitator superfamily domain containing 13A.
      
 0.559
slc46a2
Solute carrier family 46 member 2.
   
  
 0.559
MFSD4B
Major facilitator superfamily domain containing 4B.
      
 0.559
unc93a
Unc-93 homolog A.
      
 0.559
mfsd12
Major facilitator superfamily domain containing 12a.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.