STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
skiV-ski avian sarcoma viral oncogene homolog a. (739 aa)    
Predicted Functional Partners:
SMAD4
Mothers against decapentaplegic homolog.
   
 0.933
LOC101173916
Mothers against decapentaplegic homolog.
   
 0.933
LOC101163504
Mothers against decapentaplegic homolog.
   
 0.933
LOC101169523
Mothers against decapentaplegic homolog.
   
 0.852
smad3
Mothers against decapentaplegic homolog.
   
 0.852
smad2
Mothers against decapentaplegic homolog.
   
 0.852
LOC101159109
Mothers against decapentaplegic homolog.
   
 0.852
smad1
Mothers against decapentaplegic homolog.
   
 0.727
smad9
Mothers against decapentaplegic homolog.
   
 0.727
LOC101160003
Mothers against decapentaplegic homolog.
   
 0.727
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.