STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc102aCoiled-coil domain containing 102A. (556 aa)    
Predicted Functional Partners:
H2L737_ORYLA
Uncharacterized protein.
      
 0.602
LOC101167240
Uncharacterized protein.
      
 0.590
LOC101155415
Epidermal growth factor receptor pathway substrate 15-like 1a.
      
 0.590
H2L717_ORYLA
Uncharacterized protein.
      
 0.586
ktn1
Kinectin 1.
      
 0.560
cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4b.
      
 0.558
metrn
Meteorin, glial cell differentiation regulator.
      
 0.515
sugct
Succinyl-CoA:glutarate-CoA transferase.
      
 0.489
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
      
 0.461
LOC101159940
POU domain protein.
      
 0.455
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.