STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsl1NSL1 component of MIS12 kinetochore complex. (261 aa)    
Predicted Functional Partners:
LOC101159673
DSN1 component of MIS12 kinetochore complex.
   
 0.992
LOC101157951
Si:dkey-6i22.5.
    
 0.984
mis12
MIS12 kinetochore complex component.
    
 0.980
ENSORLP00000032040
Uncharacterized protein.
   
 0.969
Knl1
Uncharacterized protein.
   
 0.950
nuf2
UF2 component of NDC80 kinetochore complex.
   
 0.942
spc24
SPC24 component of NDC80 kinetochore complex.
   
 0.934
ndc80
NDC80 kinetochore complex component.
   
 0.915
spc25
SPC25 component of NDC80 kinetochore complex.
   
 0.896
bub1
BUB1 mitotic checkpoint serine/threonine kinase.
   
 0.840
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.