STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166884Uncharacterized protein. (310 aa)    
Predicted Functional Partners:
wdr48
WD repeat domain 48b.
   
 0.926
wdr20
WD repeat domain 20a.
   
 0.808
LOC101168835
WD repeat domain 20b.
   
 0.808
LOC101159324
DM1 locus, WD repeat containing.
   
 0.808
rps27a
Ribosomal protein S27a.
    
 0.760
LOC101172571
FA complementation group D2.
    
 0.697
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.679
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
 0.679
fanci
FA complementation group I.
   
 0.665
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.624
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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