STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105355996Fibronectin type-III domain-containing protein. (512 aa)    
Predicted Functional Partners:
LOC101171126
Uncharacterized protein.
     
0.900
fancm
Uncharacterized protein.
    
 0.634
LOC105355425
Si:dkey-202l22.6.
  
  
  0.535
arhgap31
Rho GTPase activating protein 31.
  
     0.455
LOC101170789
Uncharacterized protein.
  
    0.440
LOC101166593
Uncharacterized protein.
     
 0.423
clip1
CAP-GLY domain containing linker protein 1a.
  
     0.423
csf2rb
IL2RB_N1 domain-containing protein.
  
     0.410
ENSORLP00000027225
Uncharacterized protein.
  
 
   0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.