LOC101170938 protein (Oryzias latipes) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

LOC101170938

RNA binding motif single stranded interacting protein 3. (514 aa)

Predicted Functional Partners:

hnrnpm

0.601

sart3

0.582

myef2

0.551

xab2

0.540

ccdc12

0.540

tfip11

0.540

cwf19l2

0.540

isy1

0.540

cwf19l1

0.540

ccdc130

0.540

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101170938	ccdc12	ENSORLP00000033719	ENSORLP00000010197	RNA binding motif single stranded interacting protein 3.	Coiled-coil domain containing 12.	0.540
LOC101170938	ccdc130	ENSORLP00000033719	ENSORLP00000024930	RNA binding motif single stranded interacting protein 3.	Coiled-coil domain containing 130.	0.540
LOC101170938	cwf19l1	ENSORLP00000033719	ENSORLP00000021628	RNA binding motif single stranded interacting protein 3.	CWF19 like cell cycle control factor 1.	0.540
LOC101170938	cwf19l2	ENSORLP00000033719	ENSORLP00000013144	RNA binding motif single stranded interacting protein 3.	CWF19 like cell cycle control factor 2.	0.540
LOC101170938	hnrnpm	ENSORLP00000033719	ENSORLP00000028445	RNA binding motif single stranded interacting protein 3.	Heterogeneous nuclear ribonucleoprotein M.	0.601
LOC101170938	isy1	ENSORLP00000033719	ENSORLP00000016603	RNA binding motif single stranded interacting protein 3.	ISY1 splicing factor homolog.	0.540
LOC101170938	myef2	ENSORLP00000033719	ENSORLP00000003405	RNA binding motif single stranded interacting protein 3.	Myelin expression factor 2.	0.551
LOC101170938	sart3	ENSORLP00000033719	ENSORLP00000026202	RNA binding motif single stranded interacting protein 3.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.582
LOC101170938	tfip11	ENSORLP00000033719	ENSORLP00000010441	RNA binding motif single stranded interacting protein 3.	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.	0.540
LOC101170938	xab2	ENSORLP00000033719	ENSORLP00000007640	RNA binding motif single stranded interacting protein 3.	XPA binding protein 2.	0.540
ccdc12	LOC101170938	ENSORLP00000010197	ENSORLP00000033719	Coiled-coil domain containing 12.	RNA binding motif single stranded interacting protein 3.	0.540
ccdc12	ccdc130	ENSORLP00000010197	ENSORLP00000024930	Coiled-coil domain containing 12.	Coiled-coil domain containing 130.	0.540
ccdc12	cwf19l1	ENSORLP00000010197	ENSORLP00000021628	Coiled-coil domain containing 12.	CWF19 like cell cycle control factor 1.	0.605
ccdc12	cwf19l2	ENSORLP00000010197	ENSORLP00000013144	Coiled-coil domain containing 12.	CWF19 like cell cycle control factor 2.	0.860
ccdc12	hnrnpm	ENSORLP00000010197	ENSORLP00000028445	Coiled-coil domain containing 12.	Heterogeneous nuclear ribonucleoprotein M.	0.545
ccdc12	isy1	ENSORLP00000010197	ENSORLP00000016603	Coiled-coil domain containing 12.	ISY1 splicing factor homolog.	0.736
ccdc12	myef2	ENSORLP00000010197	ENSORLP00000003405	Coiled-coil domain containing 12.	Myelin expression factor 2.	0.650
ccdc12	sart3	ENSORLP00000010197	ENSORLP00000026202	Coiled-coil domain containing 12.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.540
ccdc12	tfip11	ENSORLP00000010197	ENSORLP00000010441	Coiled-coil domain containing 12.	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.	0.810
ccdc12	xab2	ENSORLP00000010197	ENSORLP00000007640	Coiled-coil domain containing 12.	XPA binding protein 2.	0.707

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

50

average node degree:

9.09

avg. local clustering coefficient:

0.923

expected number of edges:

13

PPI enrichment p-value:

1.81e-14

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006865

Amino acid transport

8 of 53

1.83

3.78

8.05e-11

GO:0006810

Transport

9 of 642

0.8

0.71

0.00015

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016597

Amino acid binding

5 of 11

2.31

3.59

6.53e-08

GO:0015276

Ligand-gated ion channel activity

3 of 11

2.09

1.6

0.00078

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030288

Outer membrane-bounded periplasmic space

8 of 32

2.05

5.16

2.00e-13

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4632

Bacterial extracellular solute-binding proteins, family 3, and NMT1/THI5 like

8 of 11

2.51

7.39

5.15e-16

CL:4629

Bacterial extracellular solute-binding proteins, family 3, and Arginine metabolism

9 of 19

2.33

7.18

8.61e-17

CL:4634

Bacterial extracellular solute-binding proteins, family 3

4 of 5

2.55

3.4

3.58e-07

CL:4644

Amino acid binding

3 of 5

2.43

2.17

8.15e-05

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0042597

Periplasmic space

8 of 133

1.43

2.22

1.79e-08

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00497

Bacterial extracellular solute-binding proteins, family 3

8 of 12

2.47

7.08

1.76e-15

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR001638

Solute-binding protein family 3/N-terminal domain of MltF

9 of 17

2.37

7.37

6.74e-17

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