STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fibcd1Fibrinogen C domain containing 1. (491 aa)    
Predicted Functional Partners:
ski
V-ski avian sarcoma viral oncogene homolog a.
      
 0.661
wfikkn2
Info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a.
      
 0.639
sh2d3c
SH2 domain containing 3Ca.
      
 0.625
LOC101158765
Laminin, beta 2-like.
      
 0.603
CACNA1D
Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.
   
  
 0.579
Cacna1d
Calcium channel, voltage-dependent, L type, alpha 1D subunit, b.
   
  
 0.579
lamb2
Laminin, beta 2 (laminin S).
      
 0.569
atp2b1
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
     
 0.568
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
 0.531
grin2a
Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.
   
  
 0.516
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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