STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdac9Histone deacetylase 9b. (668 aa)    
Predicted Functional Partners:
H2M348_ORYLA
Tudor-knot domain-containing protein.
    
 0.829
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.829
Arid4a
Tudor domain-containing protein.
    
 0.829
LOC101156710
Retinoblastoma binding protein 4, like.
   
 0.760
rbbp4
Retinoblastoma binding protein 4.
   
 0.728
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.655
sin3a
SIN3 transcription regulator family member Aa.
   
 0.631
sin3b
SIN3 transcription regulator family member B.
   
 0.631
LOC101163723
SIN3 transcription regulator family member Ab.
   
 0.631
LOC101163392
CREB binding protein a.
    
 0.621
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.