STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157185Tripartite motif containing 25. (652 aa)    
Predicted Functional Partners:
LOC101158892
Interferon regulatory factor 3.
   
 0.740
H2LSA2_ORYLA
ISG15 ubiquitin like modifier.
    
 0.683
mavs
CARD_2 domain-containing protein.
   
 0.675
LOC101162646
SEFIR domain-containing protein.
      
 0.674
trim32
Tripartite motif containing 32.
    
 0.637
tbk1
TANK-binding kinase 1.
   
 0.597
trim13
Tripartite motif containing 13.
      
0.589
rbm15
RNA binding motif protein 15.
      
 0.564
cd82
Tetraspanin.
      
 0.558
HSF1
Heat shock transcription factor 1.
   
  
 0.557
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.