STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158109Zgc:193690. (521 aa)    
Predicted Functional Partners:
gle1
Uncharacterized protein.
    
 
 0.922
nup214
Nup214_FG domain-containing protein.
    
 
 0.910
LOC101163319
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).
  
  
 
0.901
nxf1
Zgc:153681.
    
 
 0.748
mif4gd
MIF4G domain containing a.
    
   0.708
ctif
CBP80/20-dependent translation initiation factor.
    
   0.708
LOC101175126
Exportin 1 (CRM1 homolog, yeast) a.
    
 
 0.533
LOC101170539
Exportin 1 (CRM1 homolog, yeast) b.
    
 
 0.533
rae1
Ribonucleic acid export 1.
   
  
 0.521
nup98
Nucleoporin 98.
    
 
 0.504
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.