STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172690Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family. (521 aa)    
Predicted Functional Partners:
LOC101175525
Myosin VIb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.639
myo6
Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.639
LOC101175393
Macrophage stimulating 1 receptor a.
    
  0.599
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.599
mst1r
Macrophage stimulating 1 receptor b.
    
  0.599
LOC101158703
Uncharacterized protein.
     
 0.589
LOC101168567
RAB guanine nucleotide exchange factor (GEF) 1.
     
 0.589
LOC101174364
RAB guanine nucleotide exchange factor (GEF) 1, like.
     
 0.589
arl15
ADP-ribosylation factor-like 15a.
    
 0.585
Arl14
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.585
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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