STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plod3Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3. (364 aa)    
Predicted Functional Partners:
LOC101161789
Collagen beta(1-O)galactosyltransferase 2.
   
0.948
LOC101160659
Collagen beta(1-O)galactosyltransferase 1.
   
0.948
colgalt1
Uncharacterized protein.
   
0.948
cercam
Cerebral endothelial cell adhesion molecule.
   
0.948
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
  
  
0.902
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
  
  
 
0.901
camkmt
Calmodulin-lysine N-methyltransferase.
     
  0.900
ENSORLP00000042136
Uncharacterized protein.
 
      0.761
ehmt2
Euchromatic histone-lysine N-methyltransferase 2.
    
  0.686
SMYD3
SET and MYND domain containing 3.
   
 0.685
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.