STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158085LIM-domain binding 1b. (473 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.911
H2MFW7_ORYLA
BHLH domain-containing protein.
    
 0.853
LOC101174459
T-cell acute lymphocytic leukemia 1.
    
 0.853
LOC101162198
LIM domain only 1.
    
 0.831
lmo3
LIM domain only 3.
    
 0.831
lhx9
LIM homeobox 9.
    
 0.696
lhx2
LIM homeobox 2b.
    
 0.696
LOC101155206
Uncharacterized protein.
    
 0.696
ISL2
ISL LIM homeobox 2a.
    
 0.689
ISL2-2
Uncharacterized protein.
    
 0.689
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.