STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc107Si:ch73-278m9.1. (315 aa)    
Predicted Functional Partners:
LOC101155802
Chemokine (C-X-C motif) ligand 19.
  
     0.495
LOC110014930
VWFD domain-containing protein.
  
 
 0.489
gpatch8
G patch domain containing 8.
  
  
  0.433
LOC101168028
BCL2 like 10.
  
     0.429
LOC101159180
Uncharacterized protein.
  
     0.427
ol-vit1
Uncharacterized protein.
  
     0.423
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 0.420
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
 0.420
LOC101173135
Vitellogenin domain-containing protein.
  
     0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.