STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc30a9Solute carrier family 30 member 9. (576 aa)    
Predicted Functional Partners:
grxcr1
Glutaredoxin and cysteine rich domain containing 1 a.
      
 0.818
ctnna1
Catenin (cadherin-associated protein), alpha 1.
      
 0.670
LOC101163600
Uncharacterized protein.
      
 0.663
ENSORLP00000038626
Ldh_1_N domain-containing protein.
  
    0.614
ccs
Copper chaperone for superoxide dismutase.
     
 0.611
tmem33
Transmembrane protein 33.
 
 
  
 0.607
slc30a6
Solute carrier family 30 member 6.
  
 
 0.606
slc30a5
Solute carrier family 30 member 5.
  
 
 0.606
slc30a7
Solute carrier family 30 member 7.
  
 
 0.606
slc30a4
Solute carrier family 30 member 4.
  
 
 0.601
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.