STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168886Uncharacterized protein. (1185 aa)    
Predicted Functional Partners:
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
    
 
 0.599
LOC101172728
Tensin 2b.
    
 
 0.526
tns2
Tensin 2a.
    
 
 0.526
LOC101155194
Uncharacterized protein.
   
 0.495
RND1
Rho family GTPase 1.
   
 0.495
RHOB
Ras homolog family member B.
   
 0.495
LOC101173444
Uncharacterized protein.
   
 0.495
LOC101158607
Uncharacterized protein.
   
 0.495
LOC101168783
Rho family GTPase 1b.
   
 0.495
LOC101160539
Uncharacterized protein.
   
 0.495
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.