STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylbXylulokinase homolog (H. influenzae). (556 aa)    
Predicted Functional Partners:
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.971
sord
Sorbitol dehydrogenase.
  
 
 0.958
gpd2
Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).
  
 
 0.954
fuom
Fucose mutarotase.
  
 
 0.933
cryzl1
Crystallin, zeta (quinone reductase)-like 1.
     
 0.905
LOC101173859
Uncharacterized protein.
    
 0.870
mecr
Mitochondrial trans-2-enoyl-CoA reductase.
     
 0.857
ZADH2
Zinc binding alcohol dehydrogenase domain containing 2.
     
 0.857
bckdha
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
    
 0.854
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
    
  0.836
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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