STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161113Enhancer of rudimentary homolog; May have a role in the cell cycle. (104 aa)    
Predicted Functional Partners:
chtop
Chromatin target of PRMT1a.
   
 
 0.680
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
  
 0.627
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
    0.624
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.622
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
   0.606
snrpg
Small nuclear ribonucleoprotein G.
   
    0.595
ALYREF
Aly/REF export factor.
   
 
 0.587
LOC101175372
RRM domain-containing protein.
   
 
 0.558
poldip3
Polymerase (DNA-directed), delta interacting protein 3.
   
 
 0.516
LOC101167611
Mago homolog, exon junction complex subunit.
   
   0.494
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.