STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfap77Uncharacterized protein. (216 aa)    
Predicted Functional Partners:
H2MRV4_ORYLA
Coiled-coil domain containing 173.
    
 
 0.661
efhb
Uncharacterized protein.
   
   0.606
c9h9orf116
Uncharacterized protein.
   
   0.605
efhc1
EF-hand domain (C-terminal) containing 1.
   
   0.602
efhc2
EF-hand domain (C-terminal) containing 2.
   
   0.602
ENSORLP00000041141
Uncharacterized protein.
   
   0.594
cfap126
Cilia and flagella associated protein 126.
   
   0.593
tekt2
Tektin 2 (testicular).
   
   0.592
tekt3
Tektin 3.
   
   0.592
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
   
   0.583
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.