STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173476Atlastin 3. (542 aa)    
Predicted Functional Partners:
LOC101170222
Reticulon.
    
 
 0.683
tex264
Testis expressed 264, ER-phagy receptor a.
      
 0.617
TEX264
Testis expressed 264, ER-phagy receptor.
      
 0.617
ccpg1
Uncharacterized protein.
      
 0.604
sec62
SEC62 homolog, preprotein translocation factor.
    
 
 0.603
spast
Spastin; Belongs to the AAA ATPase family.
   
 
 0.566
reep1
Receptor expression-enhancing protein.
    
 
 0.528
LOC101163837
Reticulon.
    
 
 0.440
LOC101161432
Reticulon.
    
 
 0.438
rtn1
Reticulon.
    
 
 0.415
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.