STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000034485Glycerophosphodiester phosphodiesterase domain containing 3a. (324 aa)    
Predicted Functional Partners:
gpd2
Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).
  
 0.700
l2hgdh
L-2-hydroxyglutarate dehydrogenase.
    
 0.630
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
 
      0.619
ypela
Protein yippee-like 3; May be involved in proliferation and apoptosis in myeloid precursor cells; Belongs to the yippee family.
 
 
  
 0.589
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
   
 
 0.508
sez6l2
Seizure related 6 homolog (mouse)-like 2.
   
 
 0.498
kif22
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.485
LOC101172219
Uncharacterized protein.
      
 0.483
pagr1
PAXIP1 associated glutamate-rich protein 1.
      
 0.481
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 
 0.478
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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