STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabl6RAB, member RAS oncogene family-like 6b. (759 aa)    
Predicted Functional Partners:
trappc8
Trafficking protein particle complex 8.
    
 0.774
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.766
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.757
trappc6b
Trafficking protein particle complex 6b.
   
 0.752
trappc2
Trafficking protein particle complex 2.
    
 0.747
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.738
lca5
Lebercilin LCA5.
   
 0.703
trappc3
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.703
uso1
USO1 vesicle transport factor.
   
 0.691
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.648
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.