STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105355137zf-3CxxC domain-containing protein. (179 aa)    
Predicted Functional Partners:
LOC101162092
Ubiquitin specific peptidase 18; Belongs to the peptidase C19 family.
   
  
 0.632
ENSORLP00000030373
Ring finger protein 213b.
   
  
 0.595
ifih1
Interferon induced with helicase C domain 1.
   
  
 0.555
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58.
   
  
 0.513
rsad2
Radical S-adenosyl methionine domain containing 2.
   
  
 0.513
LOC101161201
Galectin.
   
  
 0.511
LOC101159552
Galectin.
   
  
 0.511
gins1
GINS complex subunit 1 (Psf1 homolog).
      
 0.503
phgdh
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      
 0.503
LOC101162901
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
  
 0.437
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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