STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cnnm2Cyclin and CBS domain divalent metal cation transport mediator 2b. (939 aa)    
Predicted Functional Partners:
LOC101159200
Transient receptor potential cation channel, subfamily M, member 6.
    
 
 0.677
gmps
Guanine monophosphate synthase.
  
 
 0.661
LOC101158870
Sulfate anion transporter 1; Mediates sulfate transport with high affinity. Mediates oxalate transport. Mediates bicarbonate transport. Does not accept succinate as cosubstrate; Belongs to the SLC26A/SulP transporter (TC 2.A.53) family.
  
  
 0.653
slc13a1
Solute carrier family 13 member 1.
      
 0.609
gigyf2
GRB10 interacting GYF protein 2.
   
  
 0.604
slc41a1
Solute carrier family 41 member 1.
      
 0.592
atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
    
 0.562
LOC101157004
Protein tyrosine phosphatase 4A3b.
    
 
 0.534
LOC101173137
Solute carrier family 34 member 2b.
     
 0.502
trpm7
Transient receptor potential cation channel, subfamily M, member 7.
    
 
 0.485
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.