STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndrg4NDRG family member 4. (607 aa)    
Predicted Functional Partners:
tomm34
Translocase of outer mitochondrial membrane 34.
   
  
 0.602
lnx2
Ligand of numb-protein X 2a.
   
 
 0.587
LOC100049292
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.
      
 0.534
LOC101168740
Mohawk homeobox b.
   
  
 0.525
LOC101172280
Ring finger protein 11.
   
  
 0.522
rnf11
Ring finger protein 11b.
   
  
 0.522
LOC101174098
Interferon induced transmembrane protein 5.
   
  
 0.519
hao1
Hydroxyacid oxidase (glycolate oxidase) 1.
      
 0.518
ptpra
Receptor-type tyrosine-protein phosphatase alpha.
   
  
 0.515
LOC101173336
Glypican 1b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
      
 0.514
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.