STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfxn5Sidoreflexin. (391 aa)    
Predicted Functional Partners:
LOC101158057
Canopy FGF signaling regulator 3.
      
 0.558
LOC101168414
Empty spiracles homeobox 1.
      
 0.544
nanos1a
NANOS1A; Belongs to the nanos family.
      
 0.515
emx2
Empty spiracles homeobox 2.
      
 0.514
LOC101158957
RAB25, member RAS oncogene family a.
    
 
 0.468
rab25
RAB25, member RAS oncogene family b.
    
 
 0.468
LOC101159906
RAB11B, member RAS oncogene family, b.
    
 
 0.463
RAB11A
RAB11A, member RAS oncogene family.
    
 
 0.463
LOC101160399
RAB11B, member RAS oncogene family, a.
    
 
 0.463
LOC101156358
Uncharacterized protein.
    
 
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.