STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160655Carbohydrate sulfotransferase. (338 aa)    
Predicted Functional Partners:
LOC101158144
Uncharacterized protein.
      
 0.624
LOC101169113
Si:ch211-114m9.1.
      
 0.624
LRRC9
Leucine rich repeat containing 9.
     
 0.610
TYMP
Thymidine phosphorylase; Catalyzes the reversible phosphorolysis of thymidine. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.
      
 0.601
gns
N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.
      
 0.592
LOC101164824
Glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID), b.
      
 0.592
acmsd
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily.
      
 0.589
pccb
Propionyl-CoA carboxylase subunit beta.
      
 0.567
rps12
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
      
 0.518
chst7
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.482
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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