STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164604Ankyrin repeat and SOCS box containing 1. (348 aa)    
Predicted Functional Partners:
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.816
LOC101154889
Cullin 5; Belongs to the cullin family.
    
 0.816
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.736
asb6
Ankyrin repeat and SOCS box containing 6.
   
 0.715
rnf7
Ring finger protein 7.
    
 0.687
ELOB
Ubiquitin-like domain-containing protein.
    
 0.654
LOC101161995
Platelet endothelial aggregation receptor 1.
    
 0.649
commd8
COMM domain containing 8.
   
  0.646
commd1
Copper metabolism (Murr1) domain containing 1.
    
  0.637
commd4
COMM domain containing 4.
    
 0.633
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.