STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tspan11Tetraspanin. (265 aa)    
Predicted Functional Partners:
itga3
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
 0.756
itgb4
Integrin beta.
    
 0.683
LOC101161995
Platelet endothelial aggregation receptor 1.
     
 0.627
ENSORLP00000029394
Uncharacterized protein.
     
 0.622
sema3e
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.
      
 0.613
LOC101155978
Piccolo presynaptic cytomatrix protein a.
      
 0.601
sema3d
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family.
   
  
 0.576
LOC101156568
Bassoon (presynaptic cytomatrix protein) b.
      
 0.568
LOC101166047
Glutamate receptor, metabotropic 3.
      
 0.557
LOC101160647
Extended synaptotagmin-like protein 1b.
    
 
 0.543
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.