STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ushbp1Usher syndrome 1C binding protein 1. (693 aa)    
Predicted Functional Partners:
utp4
UTP4 small subunit processome component.
   
 0.973
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.973
bms1
BMS1 ribosome biogenesis factor.
   
 0.972
wdr43
WD repeat domain 43.
   
 0.968
utp15
UTP15 small subunit processome component.
   
 0.967
wdr75
WD repeat domain 75.
   
 0.967
nol6
Nucleolar protein 6.
   
 0.966
LOC101167684
PWP2 small subunit processome component.
   
 
 0.963
rrp7a
Ribosomal RNA processing 7 homolog A.
   
 0.958
fcf1
FCF1 rRNA-processing protein.
   
 0.957
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.