garnl3 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

garnl3

GTPase activating Rap/RanGAP domain like 3. (1051 aa)

Predicted Functional Partners:

LOC101170286

0.569

tbrg1

0.565

carnmt1

0.558

trappc10

0.558

ei24

0.487

LOC101161005

0.455

LOC101163425

0.454

ralgapb

0.434

LOC101156149

0.421

LOC101157118

0.421

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156149	LOC101170286	ENSORLP00000001677	ENSORLP00000015795	Uncharacterized protein.	Ral GEF with PH domain and SH3 binding motif 1.	0.461
LOC101156149	garnl3	ENSORLP00000001677	ENSORLP00000035118	Uncharacterized protein.	GTPase activating Rap/RanGAP domain like 3.	0.421
LOC101156149	ralgapb	ENSORLP00000001677	ENSORLP00000034664	Uncharacterized protein.	Ral GTPase activating protein, beta subunit (non-catalytic).	0.463
LOC101157118	LOC101170286	ENSORLP00000030288	ENSORLP00000015795	V-ral simian leukemia viral oncogene homolog Ba (ras related).	Ral GEF with PH domain and SH3 binding motif 1.	0.461
LOC101157118	garnl3	ENSORLP00000030288	ENSORLP00000035118	V-ral simian leukemia viral oncogene homolog Ba (ras related).	GTPase activating Rap/RanGAP domain like 3.	0.421
LOC101157118	ralgapb	ENSORLP00000030288	ENSORLP00000034664	V-ral simian leukemia viral oncogene homolog Ba (ras related).	Ral GTPase activating protein, beta subunit (non-catalytic).	0.463
LOC101161005	garnl3	ENSORLP00000006859	ENSORLP00000035118	WH1 domain-containing protein.	GTPase activating Rap/RanGAP domain like 3.	0.455
LOC101163425	garnl3	ENSORLP00000026525	ENSORLP00000035118	Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.	GTPase activating Rap/RanGAP domain like 3.	0.454
LOC101170286	LOC101156149	ENSORLP00000015795	ENSORLP00000001677	Ral GEF with PH domain and SH3 binding motif 1.	Uncharacterized protein.	0.461
LOC101170286	LOC101157118	ENSORLP00000015795	ENSORLP00000030288	Ral GEF with PH domain and SH3 binding motif 1.	V-ral simian leukemia viral oncogene homolog Ba (ras related).	0.461
LOC101170286	garnl3	ENSORLP00000015795	ENSORLP00000035118	Ral GEF with PH domain and SH3 binding motif 1.	GTPase activating Rap/RanGAP domain like 3.	0.569
carnmt1	ei24	ENSORLP00000015662	ENSORLP00000023184	Carnosine N-methyltransferase 1.	EI24 autophagy associated transmembrane protein.	0.487
carnmt1	garnl3	ENSORLP00000015662	ENSORLP00000035118	Carnosine N-methyltransferase 1.	GTPase activating Rap/RanGAP domain like 3.	0.558
carnmt1	tbrg1	ENSORLP00000015662	ENSORLP00000030889	Carnosine N-methyltransferase 1.	Transforming growth factor beta regulator 1.	0.558
carnmt1	trappc10	ENSORLP00000015662	ENSORLP00000031770	Carnosine N-methyltransferase 1.	Trafficking protein particle complex 10.	0.558
ei24	carnmt1	ENSORLP00000023184	ENSORLP00000015662	EI24 autophagy associated transmembrane protein.	Carnosine N-methyltransferase 1.	0.487
ei24	garnl3	ENSORLP00000023184	ENSORLP00000035118	EI24 autophagy associated transmembrane protein.	GTPase activating Rap/RanGAP domain like 3.	0.487
ei24	tbrg1	ENSORLP00000023184	ENSORLP00000030889	EI24 autophagy associated transmembrane protein.	Transforming growth factor beta regulator 1.	0.405
ei24	trappc10	ENSORLP00000023184	ENSORLP00000031770	EI24 autophagy associated transmembrane protein.	Trafficking protein particle complex 10.	0.487
garnl3	LOC101156149	ENSORLP00000035118	ENSORLP00000001677	GTPase activating Rap/RanGAP domain like 3.	Uncharacterized protein.	0.421